Why Tax Obligations Depend on Your Business Structure
Before you can understand what taxes you owe, you need to know how your business is classified. The IRS taxes different entity types differently, and the structure you chose at registration determines which forms you file, how profit is reported, and whether the business itself pays tax or the income flows to your personal return.
Most small businesses — sole proprietorships, single-member LLCs, partnerships, and S-corporations — use pass-through taxation. That means the business itself doesn't pay federal income tax. Instead, profits or losses appear on the owner's Form 1040, where they're taxed at individual rates. C-corporations are the main exception: they pay a flat 21% corporate tax rate on profits, and owners pay personal income tax again on any dividends received.
Your structure also affects your exposure to self-employment tax and how you pay yourself. See our breakdown of the financial implications of different business structures for a closer look at how each option compares.
Self-Employment Tax
A federal tax covering Social Security and Medicare contributions for individuals who work for themselves. Unlike traditional employees, self-employed individuals pay both the employer and employee portions, totaling 15.3% on net earnings up to the Social Security wage base.
Estimated Quarterly Taxes
Prepayments of federal (and often state) income and self-employment tax made four times a year. The IRS generally requires these payments if you expect to owe $1,000 or more in tax for the year after subtracting withholding and credits.
Pass-Through Taxation
A structure where business profits are not taxed at the entity level but instead "pass through" to the owner's personal tax return. Sole proprietorships, partnerships, S-corps, and most LLCs are taxed this way.
Employer Identification Number (EIN)
A nine-digit federal tax ID issued by the IRS. Required for businesses with employees, most corporations and partnerships, and businesses that file certain excise or pension plan returns.
Payroll Tax
Taxes withheld from employee wages and matched by the employer. They cover federal income tax withholding, Social Security, and Medicare. Employers deposit these with the IRS on a set schedule and report them using Form 941.
Sales Tax Nexus
The connection between your business and a state that creates an obligation to collect and remit that state's sales tax. Nexus can be established by physical presence (an office or employee) or by exceeding a state's economic thresholds for online sales.
Federal Income and Self-Employment Tax
If you operate as a sole proprietor or single-member LLC, your net business profit is reported on Schedule C attached to your personal Form 1040. That profit is subject to both regular income tax (at your marginal rate) and self-employment tax — currently 15.3% on the first $168,600 of net earnings (2024 threshold; this adjusts annually for inflation).
The self-employment tax exists because traditional employees split Social Security and Medicare contributions with their employer. When you work for yourself, you pay both halves. One partial offset: you can deduct half of the self-employment tax on your Form 1040 as an above-the-line deduction, reducing your taxable income.
Because no employer is withholding tax from a paycheck, most self-employed individuals must make estimated quarterly tax payments using Form 1040-ES. Missing these payments can result in an underpayment penalty even if you pay the full balance at tax time. The IRS generally expects four payments per year; specific due dates and calculation worksheets are included in the Form 1040-ES instructions.
| Self-employment tax rate | 15.3% (12.4% Social Security + 2.9% Medicare) (IRS Publication 334) |
| Quarterly estimated tax due dates | April 15, June 15, September 15, January 15 (IRS Schedule SE / Form 1040-ES) |
| Threshold to require estimated payments | Expecting to owe $1,000+ after withholding (IRS Form 1040-ES instructions) |
| Federal payroll deposit schedule options | Monthly or semi-weekly, based on prior lookback period (IRS Publication 15 (Circular E)) |
| Small business most common entity forms | Sole proprietorship, LLC, S-corp, C-corp, partnership (SBA.gov) |
| W-2 and 1099-NEC filing deadline (to recipients) | January 31 of the following year (IRS General Instructions for Information Returns) |
Payroll Tax: What Hiring Triggers
The moment you hire your first W-2 employee, a new layer of tax obligations kicks in. As an employer, you are responsible for:
- Withholding federal income tax, Social Security (6.2%), and Medicare (1.45%) from each employee's paycheck
- Matching the Social Security and Medicare contributions your employees pay
- Depositing those combined amounts with the IRS on a monthly or semi-weekly schedule, depending on your prior-year payroll totals
- Filing Form 941 quarterly to report wages paid and taxes withheld
- Paying FUTA (Federal Unemployment Tax Act) tax, which funds unemployment programs — generally 6% on the first $7,000 of each employee's wages, often reduced by a state credit
You'll also need to issue W-2 forms to employees and 1099-NEC forms to independent contractors paid $600 or more in a calendar year, both due to recipients by January 31. Misclassifying workers — treating employees as contractors — is a common and costly mistake. Refer to IRS Publication 15-A for classification guidance.
This Is General Information, Not Tax Advice
Tax rules vary by business structure, state, and individual circumstances. The information here is intended as a general educational overview based on IRS guidance and SBA resources. Always consult a licensed CPA, enrolled agent, or tax attorney for guidance specific to your situation.
Sales Tax and State-Level Obligations
Sales tax in the US is entirely state-administered — there is no federal sales tax. Whether you need to collect it, at what rate, and on which goods or services depends on the states where you have sales tax nexus.
Historically, nexus meant a physical presence — an office, employee, or warehouse in a state. After the Supreme Court's 2018 South Dakota v. Wayfair decision, most states also enforce economic nexus rules, which apply when an out-of-state seller exceeds a state's sales volume or revenue threshold (commonly $100,000 in sales or 200 transactions per year). If you sell online and ship to customers across multiple states, you may have nexus in more states than you realize.
States also impose their own income or franchise taxes on businesses operating within their borders. Requirements vary significantly — some states have no income tax, others impose a flat rate or a graduated structure. Check with your state's department of revenue for specifics.
Before opening, confirm that your registration and tax enrollment steps are complete. Our small business registration checklist walks through the key enrolment steps to take before you open your doors.
Recordkeeping: The Foundation of Tax Compliance
Accurate records aren't just good practice — they're a legal requirement and your best protection in an audit. The IRS generally recommends keeping records that support your income, deductions, and credits for at least three years from the date you filed the return, and longer in certain circumstances (six years if you underreported income by more than 25%; indefinitely if fraud is involved).
At minimum, maintain:
- Bank statements and credit card records
- Receipts for all business expenses
- Invoices sent and received
- Payroll records and employment tax filings
- Asset purchase records (needed to calculate depreciation)
Bookkeeping software can automate much of this, but the underlying discipline — recording transactions promptly and accurately — is on you. For a broader foundation in business finance, see our complete guide to small business finances, which covers cash flow, recordkeeping, and tax basics in one place.
This article is for general informational purposes only and does not constitute tax, legal, or financial advice. Tax obligations vary by business type, state, and individual circumstances. Consult a licensed CPA, enrolled agent, or tax attorney for guidance tailored to your specific situation.